Description of Individual Course Units
Course Unit CodeCourse Unit TitleType of Course UnitYear of StudySemesterNumber of ECTS Credits
9101045832012Molecular Dynamics Simulations Elective118
Level of Course Unit
Second Cycle
Objectives of the Course
Moleküler dinamik simülasyonu öğrenimi ve bazı önemli uygulamaları.
Name of Lecturer(s)
Dr. Öğr. Üyesi Metin Bilge
Learning Outcomes
1
2
3
4
5
Mode of Delivery
Face to Face
Prerequisites and co-requisities
Yok
Recommended Optional Programme Components
Yok
Course Contents
Hartree-Fock teorisi, Yoğunluk fonksiyonu teorisi, Baz setleri, Data bank kullanımı, VMD programının genel yapısı, VMD programının uygulamaları, NAMD programının genel yapısı, NAMD programının uygulamaları.
Weekly Detailed Course Contents
WeekTheoreticalPracticeLaboratory
Recommended or Required Reading
DERS KİTABI: Molecular dynamics simulations (elementary methods), J. M. Haide, A Wiley intersicience publication, 1997. YARDIMCI KİTAPLAR: The art of molecular dynamics simulation, D. C. Rapaport, Cambridge University press, 2002. VMD User’s Guide, version 1.9, University of Illinois.
Planned Learning Activities and Teaching Methods
Assessment Methods and Criteria
Term (or Year) Learning ActivitiesQuantityWeight
SUM0
End Of Term (or Year) Learning ActivitiesQuantityWeight
SUM0
SUM0
Language of Instruction
Turkish
Work Placement(s)
Yok
Workload Calculation
ActivitiesNumberTime (hours)Total Work Load (hours)
TOTAL WORKLOAD (hours)0
Contribution of Learning Outcomes to Programme Outcomes
PO
1
PO
2
PO
3
PO
4
PO
5
PO
6
PO
7
PO
8
PO
9
PO
10
PO
11
LO1           
LO2           
LO3           
LO4           
LO5           
* Contribution Level : 1 Very low 2 Low 3 Medium 4 High 5 Very High
 
Ege University, Bornova - İzmir / TURKEY • Phone: +90 232 311 10 10 • e-mail: intrec@mail.ege.edu.tr